Linkage disequilibrium in two-locus,finite, random mating models without selection or mutation

Linkage disequilibrium is discussed for three two-locus, finite, random mating models in genetics, two models being Markov chains and the third a diffusion process. The expected value of the square of the disequilibrium function at any time is computed for the Markov chains. There is discussion of the relationships between the models and of the influence of finite population size on correlation between loci. It is suggested that there may be danger in assuming too simple a relationship between population size and degree of disequilibrium.     

Patterns of extensive genetic differentiation and variation among European harbor seals (Phoca vitulina vitulina) revealed using microsatellite DNA polymorphisms

The harbor seal (Phoca vitulina) has the most extensive distribution of any phocid seal species. An analysis of population structure in this species across its European range was made using 7 phocid derived microsatellites in a sample of 1,029 individuals from 12 separate geographic areas. Despite the species potential for long-distance movement, significant genetic differentiation between areas was observed using an unbiased estimator of RST. Six distinct population units were identified: Ireland-Scotland, English east coast, Waddensea, western Scandinavia (Norway-Kattegat-Skagerrak-west Baltic), east Baltic, and Iceland. Little local substructuring is present along coastlines with a continuous distribution of breeding animals, but differentiation does increase with geographic distance. The degree of differentiation is greater over equivalent distances where the distribution is discontinuous, such as along coasts where breeding colonies are separated by large distances or by stretches of open sea. Patterns of population differentiation derived from microsatellites are very similar to those obtained from previous mitochondrial DNA analysis and suggest that philopatry in harbor seals operates over 300-500 km. In Europe, harbor seals have experienced a complex demographic history and patterns of population structure are likely to have been affected by natural environmental influences such as Pleistocene glaciations and epizootics. Comparison of Nm values from an unbiased estimator of RST, GST, and theta are consistent and, in some cases, may indicate populations where conditions deviate from the expectations of the RST model.      

An inexpensive tag for short-term studies in milkfish (Cbanos chanos Forsskal) and in seabass (Lates calcarifer Bloch)

An opercular tag for marking adult milkfish ( Chanos chanos Forsskal) and seabass ( Lates calcarifer Bloch) is described. High tag retention and relatively low mortality rates were observed in adult fish handled two to ten times during 14-to 60-day tests. The features and advantages of the tag for marking large-sized fish in short-term studies are discussed.

Zusammenfassung

Eine preiswerte Markierung für Kurzzeitstudien des Milchfisches (Chanos chanos Forsskal) und der Centropomidae (Lates calcarifer Bloch)
Eine Kiemendeckel-Markierung für adulte Milchfische (Chanos chanos Forsskal) und Centropomidae (Lates calcacifer Bloch) wird beschrieben. Sie zeichnet sich durch gute Haltbarkeit aus und verursacht relativ geringe Mortalität bei adulten Fischen, die in Versuchen von 14 bis 60 Tage Dauer 2-bis 10mal untersucht wurden. Die Eigenschaften und Vorteile dieser Markierung für große Fische in Kurzzeitstudien werden diskutiert.

Résumé

Un marquage économique pour des études de courte durée du chanidé (Chanos chanos Forsskal) et du centropomidé (Lates calcarifer Bloch)
Un marquage d'opercule pour les chanidés (Chanos chanos Forsskal) et les centropomidés (Lates calcarifer Bloch) adultes est décrit. Une bonne conservation et une mortalité relativement basse ont été observées chez des poissons adultes examinés 2 à 10 fois pendant des expériences d'une durée de 14 à 60 jours. Les caractéristiques et les avantages du marquage de poissons de grande taille pendant des expériences d'une courte durée sont discutés.     

Domains of receptor mobility and endocytosis in the membranes of neonatal human erythrocytes in the membranes of neonatal human erythrocytes and reticulocytes are deficient in spectrin

It has previously shown (Schekman, R., and S.J. Singer, Proc. Natl. Acad. Sci. U.S.A. 73:4075-4079) that receptors in the membranes of neonatal human erythrocytes show a restricted degree of lateral mobility, whereas in adult human erythrocytes the receptors are essentially immobile. This restricted mobility is exhibited, for example, when concanavalin A (Con A) induces a limited clustering of its receptors in the neonatal erythrocyte membrane, resulting in the formation of invaginations and endocytic vesicles. This does not happen with adult cells. By the use of indirect immunoferritin labeling of ultrathin frozen sections of Con A-treated neonatal blood cells, we now show that the invaginations and endocytotic vesicles do not stain for spectrin, whereas the adjacent unperturbed membrane is heavily stained. The reticulocytes in the neonatal cell population undergo substantially more Con A-induced invagination and endocytosis than do the erythrocytes. These results lend strong support to the hypothesis that specialized discrete domains exist, or are induced, in the membranes of these neonatal cells, in which receptors are laterally mobile, whereas in the remaining (and predominant) part of the membrane the receptors are immobile. Such mobile domains are characterized by an absence of spectrin. During the maturation of the neonatal reticulocyte to erythrocyte, it is proposed that these domains are in large part, but not completely, eliminated.     

Ages,extinction times,and first passage probabilities for a multiallele diffusion model with irreversible mutation

We derive some new results for diffusion models in population genetics of the “infinite-alleles” type. Assuming present allelic frequencies known, we find expected values for times which may be interpreted either as the age of the kth oldest allele or the time to extinction of the “kth-to-last” allele to be lost. We also find some conditional expectations and probabilities related to the order of extinction or creation of the alleles. Computations illustrate the dependence of the expected times on the mutation rate.     

Comparative phosphate acquisition in giant-celled rhizophytic algae (Bryopsidales, Chlorophyta): Fleshy vs. calcified forms

Phosphate uptake through above-ground thalli vs. subterranean rhizoids has been compared in siphonaceous rhizophytic green algal species from five globally distributed tropical genera: Avrainvillea nigricans Decaisne, Caulerpa lanuginosa J. Agardh, Halimeda incrassata (J. Ellis) J.V. Lamouroux, Penicillus capitatus Lamarck, and Udotea flabellum (J. Ellis & Solander) M. Howe. Plants were collected, acclimated to lab conditions for 3 days, and then incubated for 8 h at saturating light intensity with 30 μM PO₄³⁻ added to their above-ground thallus or below-ground rhizoids. Percent tissue phosphorus was then compared to control specimens, which were run simultaneously in the absence of phosphate. The two fleshy species, A. nigricans and C. lanuginosa, showed no significant differences in tissue nutrient status, and displayed much larger variation among controls than the three calcified species. Calcified species showed greater phosphorus content after being exposed to either above- or below-ground thallus portions, indicating that these seaweeds can respond to short term increases in nutrient availability and have a more regulated nutrient acquisition mechanism. Results suggest that calcification may play an important role in phosphorus absorption.     

Cytosolic thioredoxin reductase 1 is required for correct disulfide formation in the ER

Folding of proteins entering the secretory pathway in mammalian cells frequently requires the insertion of disulfide bonds. Disulfide insertion can result in covalent linkages found in the native structure as well as those that are not, so‐called non‐native disulfides. The pathways for disulfide formation are well characterized, but our understanding of how non‐native disulfides are reduced so that the correct or native disulfides can form is poor. Here, we use a novel assay to demonstrate that the reduction in non‐native disulfides requires NADPH as the ultimate electron donor, and a robust cytosolic thioredoxin system, driven by thioredoxin reductase 1 (TrxR1 or TXNRD1). Inhibition of this reductive pathway prevents the correct folding and secretion of proteins that are known to form non‐native disulfides during their folding. Hence, we have shown for the first time that mammalian cells have a pathway for transferring reducing equivalents from the cytosol to the ER, which is required to ensure correct disulfide formation in proteins entering the secretory pathway.     

Nutrient manipulation methods for coral reef studies: A critical review and experimental field data

The results reported in this paper demonstrate suboptimal experimental designs in some of the previously published manipulative methods and provide insights for the improvement of in-situ nutrient studies on coral reefs. Overgrown 0.5-liter porous clay-pot diffusers (“mini-reefs”—following a decade of recruitment, colonization and competition) were utilized to evaluate protocols for studies of controlled nutrient enrichment on coral reefs. A commonly used fertilizer, Tree Food Stakes resulted in detrimental 11-fold and 20-fold decreases of fleshy algae and calcareous coralline algae, respectively, relative to the Control treatments; while blue-green algae (Cyanobacteria) became significantly (6 times) more abundant. Osmocote-filled mini-reefs showed no such negative differences in mortality from the Controls for any functional group. By avoiding the pitfalls of inappropriate sources of enrichment, insufficient durations of colonization/competition studies, suboptimal study areas and inadequate nutrient detection limits in future research, the potential to provide new insights into the nutrient status of coral reefs is greatly increased.